SRX10976884
GSM5330960: TF ChIP-seq from H1 (ENCLB619PPT); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RNF2

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

sample_type
cell line
sex
male
dev stage
embryonic
age
unknown
donor ID
ENCDO000AAW
lab
Bradley Bernstein, Broad
source
CDI
health state
healthy
cell line
H1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/97a73f1c-6372-4dd2-b275-0b8e855cbd5a/@@download/attachment/Cell_Paper_ChIP_protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
37182614
Reads aligned (%)
95.6
Duplicates removed (%)
53.4
Number of peaks
2969 (qval < 1E-05)

hg19

Number of total reads
37182614
Reads aligned (%)
94.9
Duplicates removed (%)
54.4
Number of peaks
2895 (qval < 1E-05)

Base call quality data from DBCLS SRA